I'm currently using the new 10 version of Zend Studio but I had the same problem in version 9.
When i run the PHPunit tests by rightclicking phpunit.xml and running it as a PHPunit test I get code coverage reports on Zend Framework files as well as my own files.
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<phpunit bootstrap="./bootstrap.php" colors="true">
<testsuite name="User Test Suite">
I'm using Zend Framework 2 and it's directory structure.
Anyone able to tell me how to stop ZF from filling up my code coverage report in Zend Studio?